Genes and environment are two-way street in autism risk

Genes and the environment each influence the role of the other in determining the risk of developing autism. Genetics can determine how susceptible one is to the environment, and environmental factors can influence gene expression and introduce mutations, says immunologist Janine LaSalle.

By Janine LaSalle
21 August 2012 | 6 min read
This article is more than five years old.
Neuroscience—and science in general—is constantly evolving, so older articles may contain information or theories that have been reevaluated since their original publication date.

Close contact: Exposure to certain environmental agents, such as chemicals found in plastics, may alter the expression of autism-related genes.

Understanding and treating autism would certainly be much simpler if there were only a single or even a handful of underlying culprits. Instead, autism is clearly falling into the category of complex human genetic disorders that include cancer, cardiovascular disease and autoimmunity. Genes and environmental factors are both involved, but using a genetic or other molecular test to predict an individual’s risk of autism remains frustratingly out of reach.

This is in large part because gene-environment calculations involve more than simple math. It may be tempting to consider genes and the environment as separate paths, but I’d like to point out that the important interactions occur on what is more of a two-way street.

In one direction, genetics can influence environmental susceptibility. In the opposite direction, environmental factors can influence the expression of genes via epigenetic mechanisms, which leave unaltered the underlying DNA sequence. The environment can also damage our DNA through mutations or by triggering genomic instability.

The good news is that much has been learned from studies of genetics and gene expression about how neurons and synapses, which transmit signals between neurons, mature in autism5. But despite these successes, there is still not a single genetic test that can predict more than one to two percent of autism cases. Determining whether a given rare variant causes autism is also often difficult to prove.

Personal risk:

The reality is that everyone enters the world with his or her own personal and complex mixture of genes and environmental influences, so finding a single smoking gun in the environment is unlikely.

An interesting example of the complex gene-environment interplay is the influence of both nutritional factors and genes on the one-carbon metabolism cycle, a pathway that includes the vitamin folate. This cycle generates important methyl groups — molecules that can epigenetically modify both DNA and histones, the proteins that serve as organizing spools for DNA.

Studies also show that environmental chemicals can adversely affect this pathway. Exposing mice during pregnancy to common pollutants such as the plastic component bisphenol A (BPA) or the flame retardant polybrominated diphenyl ether (PBDE) lowers DNA methylation levels17,18. Giving the mice folic acid counteracts the effects of BPA, probably by providing additional methyl donors17

PBDE’s effect on methylation in the brain is also linked to social deficits in mice that model Rett syndrome18. So genes and the environment can combine to modify DNA methylation, resulting in changes to gene expression and altered behavior.

Two-way street:

My team led a study, set to be published later this month in Environmental and Molecular Mutagenesis, that examines the effect of long-term exposure to organic pollutants19.

We looked at the effect of PBDEs and polychlorinated biphenyls, or PCBs, on 107 postmortem brains from individuals who had autism of unknown causes, who had autism with a known genetic causes or who showed typical development. We naively expected to find higher exposure levels in the brains of those who had autism from an unknown genetic cause than in those who had autism from an underlying mutation.

Instead, we found that levels of the historic pollutant PCB-95 are strongly associated with duplication of the 15q11-13 genomic region (dup15q), a common CNV among people with autism. Interestingly, all of the dup15q brain samples are from individuals born after 1980, although the U.S. banned the use of PCBs in 1976. 

Among the samples with PCB-95 exposure, all five cases of 15q duplications are inherited from the mother, raising the possibility that maternal PCB-95 exposure may have predisposed the 15q11-13 region to rearrangement. PCBs are not known mutagens, but there is less DNA methylation in the dup15q brain samples than in controls, suggesting that hypomethylation could lead to instability of this region.

This study certainly raises more questions than it answers about the two-way interaction of genes and environment in autism risk. How do the rare new CNVs and mutations observed in autism arise? Could some of these genetic changes be a result of exposure to environmental toxins? How important are DNA methylation levels in genetic stability

We may need to look back as far as a generation or two in epidemiology studies of gene-environmental interaction to get concrete answers to these questions. Animal and cell culture models of these interactions may help reveal the molecular and genomic mechanisms involved.

Janine LaSalle is professor of medical microbiology and immunology at the University of California, Davis.


1: Malhotra D. and J. Sebat Cell 148, 1223-1241 (2012) PubMed

2: Neale B.M. et al. Nature 485, 242-245 (2012) PubMed

3: O’Roak B.J. et al. Nature 485, 246-250 (2012) PubMed

4: Sanders S.J. et al. Nature 485, 237-241 (2012) PubMed

5: Luo R. et al. Am. J. Hum. Genet. 91, 38-55 (2012) PubMed

6: Landrigan P.J. et al. Environ. Health Perspect. 120, a258-260 (2012) PubMed

7: Hultman C.M. et al. Mol. Psychiatry 16, 1203-1212 (2011) PubMed

8: Shelton J.F. et al. Autism Res. 3, 30-39 (2010) PubMed

9: Turner T. et al. PLoS One 6, e26418 (2011) PubMed

10: Tanne J.H. Brit. Med. J. 344, e2768 (2012) PubMed

11: Krakowiak P. et al. Pediatrics 129, e1121-e1128 (2012) PubMed

12: Brown A.S. Dev. Neurobiol. Epub ahead of print (2012) PubMed

13: Kalkbrenner A.E. et al. Epidemiology 21, 631-641 (2010) PubMed

14: Volk H.E. et al. Environ. Health Perspect. 119, 873-877 (2011) PubMed

15: Schmidt R.J. et al. Am. J. Clin. Nutr. 96, 80-89 (2012) PubMed

16: Schmidt R.J. et al. Epidemiology 22, 476-485 (2011) PubMed

17: Dolinoy D.C. et al. Proc. Natl. Acad. Sci. USA 104, 13056-13061 (2007) PubMed

18: Woods R. et al. Hum. Mol. Genet. 21, 2399-2411 (2012) PubMed

19: Mitchell M.M. et al. Environ. Mol. Mutagen. Epub ahead of print (2012) PubMed