Open-source tools

Recent articles

Illustration of three figures standing in front of a grid of dots and a world map.

The S-index Challenge: Develop a metric to quantify data-sharing success

The NIH-sponsored effort aims to help incentivize scientists to share data. But many barriers to the widespread adoption of useful data-sharing remain.

By Loren Frank
8 October 2024 | 6 min listen
Research image of a variety of brain atlases.

New ‘decoder’ tool translates functional neuroimaging terms across labs

The compendium of brain-parcellation atlases makes it possible to compare large-scale network data, which often involves different and overlapping network names.

By Holly Barker
23 July 2024 | 4 min read
Research image of data from electrode arrays inserted into mice.

10 standards for brain electrode-array recordings enhance reproducibility

Electrophysiology findings can vary widely from lab to lab, even among those using identical protocols. New guidelines set forth in a preprint should help.

By Elissa Welle
12 July 2024 | 5 min read
Image of neural activity in a mouse as seen through the Miniscope.

Designing an open-source microscope

Funding for the development of open-source tools is on the rise, but support for their maintenance and dissemination, both crucial for their meaningful uptake, remains a major challenge.

By Daniel Aharoni
17 June 2024 | 6 min read

Getting musical to spot patterns in whole-brain imaging data: Q&A with Elizabeth Hillman

The new technique takes advantage of humans’ “extraordinary” sensory processing abilities, Hillman says.

By Calli McMurray
21 February 2024 | 0 min watch

Explore more from The Transmitter

Dmitri Chklovskii outlines how single neurons may act as their own optimal feedback controllers

From logical gates to grandmother cells, neuroscientists have employed many metaphors to explain single neuron function. Chklovskii makes the case that neurons are actually trying to control how their outputs affect the rest of the brain.

By Paul Middlebrooks
12 February 2025 | 99 min listen

Dopamine ‘gas pedal’ and serotonin ‘brake’ team up to accelerate learning

Mice learn fastest and most reliably when they experience an increase in dopamine paired with an inhibition of serotonin in their nucleus accumbens, a new study shows, helping to resolve long-standing questions about the neuromodulators’ relationship.

By Angie Voyles Askham
12 February 2025 | 5 min read
Illustration of a body, brain visible through a transparent head, looking at orange circles over its hands.

Rethinking mental health: The body’s impact on the brain

Mounting evidence illustrates how peripheral molecules can influence brain function, offering new therapeutic targets.

By Georgia E. Hodes
11 February 2025 | 6 min read