Data-sharing
Data access changes to UK Biobank stir unease in neuroscientists
“I feel a little bit in limbo,” says neuroscientist Stephanie Noble, who has paused a study using Biobank data after the repository shifted from a data download to a cloud-only access model.
![A digitally distorted image of a file folder against a blue gradient background.](https://www.thetransmitter.org/wp-content/uploads/2024/07/funkydata-1200-1024x692.webp)
Data access changes to UK Biobank stir unease in neuroscientists
“I feel a little bit in limbo,” says neuroscientist Stephanie Noble, who has paused a study using Biobank data after the repository shifted from a data download to a cloud-only access model.
Neuroscience graduate students deserve comprehensive data-literacy education
Despite growing requirements around how to handle and share data, formal training is lacking.
![Illustration of a scientist attempting to wrangle many forms of data at once: a pile of charts and graphs threatens to knock them off of their feet as they attempt to prop it up.](https://www.thetransmitter.org/wp-content/uploads/2024/07/1200-open-neuro-data-literacy-education-transmitter-neuroscience-1024x683.webp)
Neuroscience graduate students deserve comprehensive data-literacy education
Despite growing requirements around how to handle and share data, formal training is lacking.
Designing an open-source microscope
Funding for the development of open-source tools is on the rise, but support for their maintenance and dissemination, both crucial for their meaningful uptake, remains a major challenge.
![Image of neural activity in a mouse as seen through the Miniscope.](https://www.thetransmitter.org/wp-content/uploads/2024/06/Miniscope-1200-1024x692.webp)
Designing an open-source microscope
Funding for the development of open-source tools is on the rise, but support for their maintenance and dissemination, both crucial for their meaningful uptake, remains a major challenge.
Knowledge graphs can help make sense of the flood of cell-type data
These tools, widely used in the technology industry, could provide a foundation for the study of brain circuits.
![-A playful “cellular map” features top-down and bottom-up views of the human brain arranged side-by-side as if they were the earth’s two hemispheres in an old-fashioned map of the world. The brains are colored to suggest land masses and bodies of water.](https://www.thetransmitter.org/wp-content/uploads/2024/05/Cell-Taxonomy-1200-1024x692.webp)
Knowledge graphs can help make sense of the flood of cell-type data
These tools, widely used in the technology industry, could provide a foundation for the study of brain circuits.
Neuroscience needs a research-video archive
Video data are enormously useful and growing rapidly, but the field lacks a searchable, shareable way to store them.
![An illustration of a figure looking at a flow chart](https://www.thetransmitter.org/wp-content/uploads/2024/05/Froemke-Databrary-1200-1024x692.webp)
Neuroscience needs a research-video archive
Video data are enormously useful and growing rapidly, but the field lacks a searchable, shareable way to store them.
Unleashing the power of DIY innovation in behavioral neuroscience
Widespread adoption of open-source tools calls for more support and training.
Unleashing the power of DIY innovation in behavioral neuroscience
Widespread adoption of open-source tools calls for more support and training.
Pooling data points to new potential treatment for spinal cord injury
By gathering raw data from multiple labs, we identified an overlooked predictor of recovery after spinal cord injury. Many more insights remain trapped in scattered data.
![An abstract illustration of colorful lines on a yellow background](https://www.thetransmitter.org/wp-content/uploads/2024/03/1200-ferguson-open-neuroscience-data-sharing-transmitter-neuroscience-1024x683.webp)
Pooling data points to new potential treatment for spinal cord injury
By gathering raw data from multiple labs, we identified an overlooked predictor of recovery after spinal cord injury. Many more insights remain trapped in scattered data.
We found a major flaw in a scientific reagent used in thousands of neuroscience experiments — and we’re trying to fix it.
As part of that ambition, we launched a public-private partnership to systematically evaluate antibodies used to study neurological disease, and we plan to make all the data freely available.
![Abstract illustration of antibodies scattered against a peach-colored background.](https://www.thetransmitter.org/wp-content/uploads/2024/01/1200-edwards-open-neuroscience-transmitter-1024x683.webp)
We found a major flaw in a scientific reagent used in thousands of neuroscience experiments — and we’re trying to fix it.
As part of that ambition, we launched a public-private partnership to systematically evaluate antibodies used to study neurological disease, and we plan to make all the data freely available.
Simply making data publicly available isn’t enough. We need to make it easy — that requires community buy-in.
I helped create a standard to make it easy to upload, analyze and compare functional MRI data. An ecosystem of tools has since grown up around it, boosting reproducibility and speeding up research.
![Illustration of hands organizing objects of various shapes and sizes.](https://www.thetransmitter.org/wp-content/uploads/2024/01/1200-poldrack-open-neuroscience-transmitter-1024x683.webp)
Simply making data publicly available isn’t enough. We need to make it easy — that requires community buy-in.
I helped create a standard to make it easy to upload, analyze and compare functional MRI data. An ecosystem of tools has since grown up around it, boosting reproducibility and speeding up research.
Name this network: Addressing huge inconsistencies across studies
Entrenched practices have stymied efforts to build a universal taxonomy of functional brain networks. But a new tool to standardize brain-imaging findings could bring us a step closer.
![An abstract illustration of boxes connected by lines](https://www.thetransmitter.org/wp-content/uploads/2024/01/1200_brainnetworks-1-1024x683.webp)
Name this network: Addressing huge inconsistencies across studies
Entrenched practices have stymied efforts to build a universal taxonomy of functional brain networks. But a new tool to standardize brain-imaging findings could bring us a step closer.
Explore more from The Transmitter
New connectomes fly beyond the brain
Researchers are mapping the neurons in Drosophila’s ventral nerve cord, where the central nervous system meets the rest of the body.
![Research image of neurons in the fly’s ventral nerve cord.](https://www.thetransmitter.org/wp-content/uploads/2024/07/lede-motormodules-1200-1024x692.webp)
New connectomes fly beyond the brain
Researchers are mapping the neurons in Drosophila’s ventral nerve cord, where the central nervous system meets the rest of the body.
Building an autism research registry: Q&A with Tony Charman
A purpose-built database of participants who have shared genomic and behavioral data could give clinical trials a boost, Charman says.
![Illustration of researchers talking to laypeople amidst strands of DNA.](https://www.thetransmitter.org/wp-content/uploads/2024/07/1200_Charman-1024x687.webp)
Building an autism research registry: Q&A with Tony Charman
A purpose-built database of participants who have shared genomic and behavioral data could give clinical trials a boost, Charman says.
Cerebellar circuit may convert expected pain relief into real thing
The newly identified circuit taps into the brain’s opioid system to provide a top-down form of pain relief.
![](https://www.thetransmitter.org/wp-content/uploads/2024/07/paincircuit-1200-1024x692.webp)
Cerebellar circuit may convert expected pain relief into real thing
The newly identified circuit taps into the brain’s opioid system to provide a top-down form of pain relief.