Connectome

Recent articles

Can neuroscientists decode memories solely from a map of synaptic connections?

Five experts discuss the progress, possibilities and hurdles of decoding a “nontrivial” memory from an organism just by analyzing its brain connectivity patterns.

By Paul Middlebrooks
17 December 2025 | 1 min read
A man with glasses reads from a paper with a graph-like pattern of peaks and valleys on it.

The buzziest neuroscience papers of 2023, 2024

The field took note of work on brain-computer interfaces for speech, the mechanism of psychedelics, a broader definition of hippocampal representations, and more.

By Calli McMurray, Francisco J. Rivera Rosario
15 November 2025 | 18 min read
A worm made of circuitry.

Whole-brain, bottom-up neuroscience: The time for it is now

Applying new tools to entire brains, starting with C. elegans, offers the opportunity to uncover how molecules work together to generate neural physiology and how neurons work together to generate behavior.

By Edward Boyden, Konrad Körding
20 October 2025 | 9 min read
A drosophila connectome.

One year of FlyWire: How the resource is redefining Drosophila research

We asked nine neuroscientists how they are using FlyWire data in their labs, how the connectome has transformed the field and what new tools they would like to see in the future.

By Francisco J. Rivera Rosario
7 October 2025 | 17 min read
Map of the fly nervous system.

Local circuit loops within body control fly behavior, new ‘embodied’ connectome reveals

The mapping, which traces how the central nervous system interacts with the rest of the body, challenges the idea that behavior control is centralized.

By Claudia López Lloreda
24 September 2025 | 5 min read

First nerve-net connectome shows how evolutionarily ancient nervous system coordinates movement

The map of a comb jelly’s aboral nerve net, which helps the animal orient and position itself within the water column, reveals a unique system for sensing the world and coordinating movement.

By Siddhant Pusdekar
16 September 2025 | 0 min watch
Research image of neuron organization in c elegans.

Worms help untangle brain structure/function mystery

The synaptic connectome of most animals bears little resemblance to functional brain maps, but it can still predict neuronal activity, according to two preprints that tackle the puzzle in C. elegans

By Holly Barker
29 August 2025 | 7 min read
Research image of connectomes for two fly species.

Cross-species connectome comparison shows uneven olfactory circuit evolution in flies

The findings start to reveal evolutionary changes that may have helped two species develop different olfactory preferences and adapt to their particular environments.

By Marta Hill
1 August 2025 | 6 min read
Research image of connectivity in the fly brain.

Connectomics 2.0: Simulating the brain

With a complete fly connectome in hand, researchers are taking the next step to model how brain circuits fuel function.

By Laura Dattaro
2 May 2025 | 10 min read
Detailed image of neurons in the mouse visual cortex.

Inhibitory cells work in concert to orchestrate neuronal activity in mouse brain

A cubic millimeter of brain tissue, meticulously sectioned, stained and scrutinized over the past seven years, reveals in stunning detail the role of inhibitory interneurons in brain structure and function.

By Katie Moisse
9 April 2025 | 6 min read

Explore more from The Transmitter

A mouse stands on a gloved hand.

Psychedelics research in rodents has a behavior problem

Simple behavioral assays—originally validated as drug-screening tools—fall short in studies that aim to unpack the psychedelic mechanism of action, so some behavioral neuroscientists are developing more nuanced tasks.

By Calli McMurray
19 December 2025 | 8 min read
Research image of organoids derived from stem cell lines from people with intellectual disability, polymicroglia or microcephaly, alongside a control organoid.

New organoid atlas unveils four neurodevelopmental signatures

The comprehensive resource details data on microcephaly, polymicrogyria, epilepsy and intellectual disability from 352 people.

By Diana Kwon
17 December 2025 | 4 min read
A scientist chases falling code with a butterfly net in a spare landscape with beautiful high clouds.

AI-assisted coding: 10 simple rules to maintain scientific rigor

These guidelines can help researchers ensure the integrity of their work while accelerating progress on important scientific questions.

By Russell Poldrack
16 December 2025 | 7 min read

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