Methods

Recent articles

Research image of a virtual environment simulating an animal’s viewpoint close to the ground.

Seeing the world as animals do: How to leverage generative AI for ecological neuroscience

Generative artificial intelligence will offer a new way to see, simulate and hypothesize about how animals experience their worlds. In doing so, it could help bridge the long-standing gap between neural function and behavior.

By Shahab Bakhtiari
8 December 2025 | 8 min read
A hand holds a clear rectangular prism up to a series of abstract patterns, offering a new view of them.

Beyond the algorithmic oracle: Rethinking machine learning in behavioral neuroscience

Machine learning should not be a replacement for human judgment but rather help us embrace the various assumptions and interpretations that shape behavioral research.

By Nedah Nemati, Matthew Whiteway
3 December 2025 | 7 min read
A tree limb-like pattern superimposed over a landscape.

Tracing neuroscience’s family tree to track its growth

By mapping connections among researchers, Neurotree makes it possible to see how the field has evolved and how shifts in lab size, publication rates and training, among other factors, shape its direction.

By Stephen David
15 November 2025 | 7 min read
Portion of The Transmitter’s state of neuroscience semantic map.

Putting 50 years of neuroscience on the map

Navigate the rise and fall of research topics over five decades using our interactive map, which is based on a semantic analysis of nearly 350,000 abstracts in leading neuroscience journals.

By The Transmitter
15 November 2025 | 3 min read
Illustration of two hands holding an abstract geometric object that resembles a human brain.

The state of neuroscience in 2025: An overview

The Transmitter presents a portrait of the field through four lenses: its focus, its output, its people and its funding.

By The Transmitter
15 November 2025 | 4 min read
Concentric circles.

What are the most transformative neuroscience tools and technologies developed in the past five years?

Artificial intelligence and deep-learning methods featured prominently in the survey responses, followed by genetic tools to control circuits, advanced neuroimaging, transcriptomics and various approaches to record brain activity and behavior.

By The Transmitter
15 November 2025 | 14 min read
Research image of fMRI scans on a black background.

Timing tweak turns trashed fMRI scans into treasure

Leveraging start-up “dummy scans,” which are typically discarded in imaging analyses, can shorten an experiment’s length and make data collection more efficient, a new study reveals.

By Angie Voyles Askham
13 November 2025 | 6 min read
Speech bubbles and images of a brain overlaid on a globe.

A community-designed experiment tests open questions in predictive processing

More than 50 scientists came together to identify the key missing data needed to rigorously test theoretical models.

By Jérôme Lecoq
12 November 2025 | 6 min read
Hands hold a scroll-like object made of ones and zeroes.

How neuroscientists are using AI

Eight researchers explain how they are using large language models to analyze the literature, brainstorm hypotheses and interact with complex datasets.

By The Transmitter
4 November 2025 | 15 min read
Research image of altered neurovascular coupling after exposure to psychedelics.

Psychedelics muddy fMRI results: Q&A with Adam Bauer and Jonah Padawer-Curry

The drugs disrupt the link between vascular and neuronal activity, which complicates interpretations of fMRI data. Adopting a more holistic view of what constitutes brain activity may help, the researchers say.

By Calli McMurray
29 October 2025 | 7 min read

Explore more from The Transmitter

Among brain changes studied in autism, spotlight shifts to subcortex

The striatum and thalamus are more likely than the cerebral cortex to express autism variants or bear transcriptional changes, two unpublished studies find.

By Holly Barker
11 December 2025 | 5 min read
Brain organoid.

What is the future of organoid and assembloid regulation?

Four experts weigh in on how to establish ethical guardrails for research on the 3D neuron clusters as these models become ever more complex.

By Claudia López Lloreda
10 December 2025 | 7 min read
Research image of variants of the ATPase subunit PSMC5/RPT6.

Insights on suicidality and autism; and more

Here is a roundup of autism-related news and research spotted around the web for the week of 8 December.

By Jill Adams
9 December 2025 | 2 min read

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